MLOC_58033 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.831673.924793.630334.74686
LEAShoots from the seedlings (10 cm shoot stage)1.714680.9523721.582341.34744
INF1Young developing inflorescences (5mm)7.335258.309816.592867.47785
INF2Developing inflorescences (1-1.5 cm)6.152836.351646.372178.21793
ROORoots from the seedlings (10 cm shoot stage)4.894274.726214.856967.02755
NODDeveloping tillers at six leaf stage, 3rd internode0.4789340.6216861.784663.06037
CAR5Developing grain, bracts removed (5 DPA)5.306695.845496.201137.01311
CAR15Developing grain, bracts removed (15 DPA)1.62951.343580.7826453.62015



CDS Structure of MLOC_58033






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58033.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58033.1CUST_13777_PI427708080AvailableAvailablecontig_42283 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42990.1 -3 2e-116 366 228/341 (67%) 13101.m04430 protein PPR repeat domain containing protein, putative
TAIR PP10 AT4G36680.1 -3 3e-23 102 78/234 (33%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17292479-17293717 REVERSE LENGTH=412