MLOC_58021 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.04235020.1708120.146527
LEAShoots from the seedlings (10 cm shoot stage)0.0656555000.0606419
INF1Young developing inflorescences (5mm)0.03354440.038286900.0362996
INF2Developing inflorescences (1-1.5 cm)0.107489000.134316
ROORoots from the seedlings (10 cm shoot stage)0.0881440.048617100.111367
NODDeveloping tillers at six leaf stage, 3rd internode0.11636500.01228210.0168077
CAR5Developing grain, bracts removed (5 DPA)488.325477.32446.965510.271
CAR15Developing grain, bracts removed (15 DPA)13.604918.768219.474144.4586



CDS Structure of MLOC_58021






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58021.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372873NoneNoneNoneNone
MLOC_58021.1CUST_3865_PI427708080AvailableAvailablecontig_42275 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18454.2 -2 2e-85 263 133/222 (60%) 13103.m02212 protein gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed
TAIR PP10 AT1G07080.1 -2 1e-56 189 92/179 (51%) Thioredoxin superfamily protein | chr1:2170069-2171861 FORWARD LENGTH=265