MLOC_58020 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)000.1330650.0476358
NODDeveloping tillers at six leaf stage, 3rd internode0.0333744000.00324887
CAR5Developing grain, bracts removed (5 DPA)48.426556.810757.377551.1258
CAR15Developing grain, bracts removed (15 DPA)7.765178.442710.432420.4142



CDS Structure of MLOC_58020






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58020.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58020.1CUST_13775_PI427708080AvailableAvailablecontig_42275 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18454.2 -3 2e-90 277 138/222 (62%) 13103.m02212 protein gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed
TAIR PP10 AT1G07080.1 -3 2e-61 202 93/173 (54%) Thioredoxin superfamily protein | chr1:2170069-2171861 FORWARD LENGTH=265