MLOC_58019 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.466976.311567.224926.26388
LEAShoots from the seedlings (10 cm shoot stage)9.129557.259248.002927.03366
INF1Young developing inflorescences (5mm)2.627813.334693.929722.78662
INF2Developing inflorescences (1-1.5 cm)5.575656.196746.490966.75281
ROORoots from the seedlings (10 cm shoot stage)8.127528.610467.3237410.336
NODDeveloping tillers at six leaf stage, 3rd internode21.925431.654540.0161104.293
CAR5Developing grain, bracts removed (5 DPA)6.353655.890516.319486.15521
CAR15Developing grain, bracts removed (15 DPA)2.816192.822082.930426.59735



CDS Structure of MLOC_58019






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58019.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362158NoneNoneNoneNone
MLOC_58019.2CUST_18164_PI427708080AvailableAvailablecontig_42106 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g38990.4 -2 0.0 589 378/695 (54%) 13108.m09392 protein OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed
TAIR PP10 AT5G56270.1 -2 4e-113 374 296/730 (41%) | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protein 2 | chr5:22780816-22783137 FORWARD LENGTH=687