MLOC_58018 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.067641.685821.619151.67307
LEAShoots from the seedlings (10 cm shoot stage)0.6827540.2326810.1304930.303174
INF1Young developing inflorescences (5mm)2.780353.697993.684113.12196
INF2Developing inflorescences (1-1.5 cm)8.3887210.00159.0145711.0361
ROORoots from the seedlings (10 cm shoot stage)1.409381.254841.277911.64802
NODDeveloping tillers at six leaf stage, 3rd internode0.998841.357951.483024.6373
CAR5Developing grain, bracts removed (5 DPA)2.57522.532462.136622.60112
CAR15Developing grain, bracts removed (15 DPA)0.286180.3288740.1843780.7082



CDS Structure of MLOC_58018






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58018.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58018.2CUST_13774_PI427708080AvailableAvailablecontig_42274 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g30380.1 +3 0.0 1348 729/1022 (71%) 13109.m03034 protein AP005392-AK108636 - NBS/LRR genes that are S-rich,divergent TIR, divergent NBS, expressed
TAIR PP10 AT5G56220.1 +3 0.0 956 529/956 (55%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:22754871-22757792 FORWARD LENGTH=973