MLOC_57998 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.870544.797155.198824.67217
LEAShoots from the seedlings (10 cm shoot stage)2.955742.465552.941072.30427
INF1Young developing inflorescences (5mm)3.576435.246726.389894.39615
INF2Developing inflorescences (1-1.5 cm)4.169284.723664.744.96894
ROORoots from the seedlings (10 cm shoot stage)5.096954.815314.918915.33837
NODDeveloping tillers at six leaf stage, 3rd internode3.210514.745522.9571812.2901
CAR5Developing grain, bracts removed (5 DPA)4.937944.935074.886024.82039
CAR15Developing grain, bracts removed (15 DPA)2.65062.593972.511086.31416



CDS Structure of MLOC_57998






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57998.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367668NoneNoneNoneNone
MLOC_57998.2CUST_18163_PI427708080AvailableAvailablecontig_42106 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g52570.1 +2 3e-121 380 263/321 (82%) 13104.m05392 protein expressed protein
TAIR PP10 AT1G56080.1 +2 7e-61 213 167/325 (51%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 196 Blast hits to 193 proteins in 50 species: Archae - 2; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | chr1:20974457-20976215 REVERSE LENGTH=310