- Predicted Gene MLOC_57998
MLOC_57998 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.87054 | 4.79715 | 5.19882 | 4.67217 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 2.95574 | 2.46555 | 2.94107 | 2.30427 |
| INF1 | Young developing inflorescences (5mm) | 3.57643 | 5.24672 | 6.38989 | 4.39615 |
| INF2 | Developing inflorescences (1-1.5 cm) | 4.16928 | 4.72366 | 4.74 | 4.96894 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 5.09695 | 4.81531 | 4.91891 | 5.33837 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 3.21051 | 4.74552 | 2.95718 | 12.2901 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 4.93794 | 4.93507 | 4.88602 | 4.82039 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.6506 | 2.59397 | 2.51108 | 6.31416 |
CDS Structure of MLOC_57998
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57998.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g52570.1 |
+2 |
3e-121 |
380 |
263/321 (82%) |
13104.m05392 protein expressed protein |
| TAIR PP10 |
AT1G56080.1 |
+2 |
7e-61 |
213 |
167/325 (51%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 196 Blast hits to 193 proteins in 50 species: Archae - 2; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | chr1:20974457-20976215 REVERSE LENGTH=310 |