MLOC_57995 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.164430.3153760.1447260.278949
LEAShoots from the seedlings (10 cm shoot stage)17.315933.545139.073828.8684
INF1Young developing inflorescences (5mm)0.2024280.1737560.1323590.163101
INF2Developing inflorescences (1-1.5 cm)0.06705740.0631480.04135330.0779757
ROORoots from the seedlings (10 cm shoot stage)0.04360360.1180160.2967310.193735
NODDeveloping tillers at six leaf stage, 3rd internode29.189931.976627.6623111.663
CAR5Developing grain, bracts removed (5 DPA)1.624521.465871.27291.69668
CAR15Developing grain, bracts removed (15 DPA)0.09806830.03734780.1417540.224505



CDS Structure of MLOC_57995






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57995.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375185NoneNoneNoneNone
MLOC_57995.6CUST_3863_PI427708080AvailableAvailablecontig_42255 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g45100.1 -3 0.0 882 453/515 (88%) 13106.m04745 protein FAD binding domain of DNA photolyase domain containing protein, expressed
TAIR PP10 AT5G24850.1 -3 0.0 664 333/475 (70%) | Symbols: CRY3 | cryptochrome 3 | chr5:8535399-8538016 REVERSE LENGTH=526