MLOC_57983 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.0559.220099.1182610.4507
LEAShoots from the seedlings (10 cm shoot stage)7.980234.488545.118165.23318
INF1Young developing inflorescences (5mm)10.998711.74113.447810.6978
INF2Developing inflorescences (1-1.5 cm)11.065210.029412.512212.7496
ROORoots from the seedlings (10 cm shoot stage)12.381610.507214.511414.327
NODDeveloping tillers at six leaf stage, 3rd internode18.98226.4548410.69324.9787
CAR5Developing grain, bracts removed (5 DPA)8.353159.203138.602679.24434
CAR15Developing grain, bracts removed (15 DPA)3.79494.334184.4544210.289



CDS Structure of MLOC_57983






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57983.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374355NoneNoneNoneNone
MLOC_57983.5CUST_3861_PI427708080AvailableAvailablecontig_42252 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g07916.1 -1 2e-62 210 124/167 (74%) 13111.m00830 protein nifU, putative, expressed
TAIR PP10 AT5G49940.1 -1 4e-55 189 110/167 (66%) | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 | chr5:20315464-20317228 FORWARD LENGTH=235