- Predicted Gene MLOC_57980
MLOC_57980 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_57980_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 3.72918 | 2.78805 | 2.31181 | 2.93447 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.79722 | 0.720285 | 1.28666 | 1.04212 |
INF1 | Young developing inflorescences (5mm) | 1.24593 | 1.82522 | 1.90139 | 1.5823 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.14423 | 1.62703 | 1.91733 | 2.29621 |
ROO | Roots from the seedlings (10 cm shoot stage) | 5.48562 | 4.42561 | 3.19699 | 5.01519 |
NOD | Developing tillers at six leaf stage, 3rd internode | 5.80036 | 6.69291 | 5.92903 | 18.8951 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.496 | 2.32325 | 2.21948 | 2.25003 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.358251 | 0.731907 | 0.353847 | 1.36769 |
CDS Structure of MLOC_57980
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57980.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g44500.1 |
+1 |
3e-134 |
392 |
192/217 (88%) |
13104.m04437 protein GEM, putative, expressed |
TAIR PP10 |
AT5G08350.1 |
+1 |
3e-54 |
184 |
88/190 (46%) |
GRAM domain-containing protein / ABA-responsive protein-related | chr5:2686417-2687175 REVERSE LENGTH=222 |