MLOC_57980 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.729182.788052.311812.93447
LEAShoots from the seedlings (10 cm shoot stage)1.797220.7202851.286661.04212
INF1Young developing inflorescences (5mm)1.245931.825221.901391.5823
INF2Developing inflorescences (1-1.5 cm)2.144231.627031.917332.29621
ROORoots from the seedlings (10 cm shoot stage)5.485624.425613.196995.01519
NODDeveloping tillers at six leaf stage, 3rd internode5.800366.692915.9290318.8951
CAR5Developing grain, bracts removed (5 DPA)1.4962.323252.219482.25003
CAR15Developing grain, bracts removed (15 DPA)0.3582510.7319070.3538471.36769



CDS Structure of MLOC_57980






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57980.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251415.1NoneNoneNoneNone
MLOC_57980.1CUST_3859_PI427708080AvailableAvailablecontig_42250 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g44500.1 +1 3e-134 392 192/217 (88%) 13104.m04437 protein GEM, putative, expressed
TAIR PP10 AT5G08350.1 +1 3e-54 184 88/190 (46%) GRAM domain-containing protein / ABA-responsive protein-related | chr5:2686417-2687175 REVERSE LENGTH=222