MLOC_57944 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.274399.839448.966288.09752
LEAShoots from the seedlings (10 cm shoot stage)9.184016.933236.827686.68108
INF1Young developing inflorescences (5mm)8.197548.836949.72526.99298
INF2Developing inflorescences (1-1.5 cm)12.144512.484111.233412.4333
ROORoots from the seedlings (10 cm shoot stage)2.92135.585044.667286.13823
NODDeveloping tillers at six leaf stage, 3rd internode5.018276.64365.9906122.2803
CAR5Developing grain, bracts removed (5 DPA)12.21211.725712.840911.0698
CAR15Developing grain, bracts removed (15 DPA)7.405817.100746.4004215.0651



CDS Structure of MLOC_57944






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57944.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371907NoneNoneNoneNone
MLOC_57944.6CUST_18162_PI427708080AvailableAvailablecontig_42106 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37540.1 -3 0.0 1472 796/1065 (75%) 13111.m03674 protein protein phosphatase 2C, putative, expressed
TAIR PP10 AT3G63340.1 -3 0.0 814 507/1096 (46%) Protein phosphatase 2C family protein | chr3:23392181-23397999 REVERSE LENGTH=1041