MLOC_57911 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.291434.545464.692564.15273
LEAShoots from the seedlings (10 cm shoot stage)8.55713.155953.302244.37114
INF1Young developing inflorescences (5mm)8.566029.153418.36047.27002
INF2Developing inflorescences (1-1.5 cm)8.796568.030019.043379.23355
ROORoots from the seedlings (10 cm shoot stage)5.41175.987996.03276.98842
NODDeveloping tillers at six leaf stage, 3rd internode18.879116.715815.072854.7568
CAR5Developing grain, bracts removed (5 DPA)34.876432.787334.913532.5437
CAR15Developing grain, bracts removed (15 DPA)14.544712.064513.26730.199



CDS Structure of MLOC_57911






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57911.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249389.1NoneNoneNoneNone
MLOC_57911.1CUST_3849_PI427708080AvailableAvailablecontig_42206 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g06990.1 +3 0.0 1162 634/820 (77%) 13105.m00754 protein TKL_IRAK_CrRLK1L-1.10 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
TAIR PP10 AT3G46290.1 +3 0.0 778 442/827 (53%) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830