MLOC_57898 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)00.16147400.151473
INF1Young developing inflorescences (5mm)00.08766710.1027510.181706
INF2Developing inflorescences (1-1.5 cm)0.1572160.65210.1025780.446407
ROORoots from the seedlings (10 cm shoot stage)0.35315200.282340.178961
NODDeveloping tillers at six leaf stage, 3rd internode0.21912900.0290770.0467811
CAR5Developing grain, bracts removed (5 DPA)401.531440.271349.707423.381
CAR15Developing grain, bracts removed (15 DPA)1.443490.8633461.472243.05638



CDS Structure of MLOC_57898






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57898.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373324NoneNoneNoneNone
MLOC_57898.2CUST_3847_PI427708080AvailableAvailablecontig_42195 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15710.1 +2 1e-43 145 74/127 (58%) 13102.m01752 protein plastocyanin-like domain containing protein, putative
TAIR PP10 AT2G02850.1 +2 2e-33 118 59/129 (46%) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129