MLOC_57890 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.12081100.04970730.084392
LEAShoots from the seedlings (10 cm shoot stage)0.0584666000.0566789
INF1Young developing inflorescences (5mm)0.12425900.07886370.0880434
INF2Developing inflorescences (1-1.5 cm)2.200251.750351.86552.32193
ROORoots from the seedlings (10 cm shoot stage)0.4923350.4152450.4239830.593591
NODDeveloping tillers at six leaf stage, 3rd internode0.053751900.2586940.26174
CAR5Developing grain, bracts removed (5 DPA)55.005454.968862.236563.0519
CAR15Developing grain, bracts removed (15 DPA)12.017412.881612.945632.0125



CDS Structure of MLOC_57890






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57890.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374971NoneNoneNoneNone
MLOC_57890.1CUST_3845_PI427708080AvailableAvailablecontig_42189 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g10540.4 +1 3e-121 358 206/262 (79%) 13112.m01117 protein OsMADS13 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT3G58780.1 +1 8e-78 245 120/181 (66%) | Symbols: SHP1, AGL1 | K-box region and MADS-box transcription factor family protein | chr3:21739150-21741766 FORWARD LENGTH=248