- Predicted Gene MLOC_57890
MLOC_57890 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.120811 | 0 | 0.0497073 | 0.084392 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.0584666 | 0 | 0 | 0.0566789 |
INF1 | Young developing inflorescences (5mm) | 0.124259 | 0 | 0.0788637 | 0.0880434 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.20025 | 1.75035 | 1.8655 | 2.32193 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.492335 | 0.415245 | 0.423983 | 0.593591 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0537519 | 0 | 0.258694 | 0.26174 |
CAR5 | Developing grain, bracts removed (5 DPA) | 55.0054 | 54.9688 | 62.2365 | 63.0519 |
CAR15 | Developing grain, bracts removed (15 DPA) | 12.0174 | 12.8816 | 12.9456 | 32.0125 |
CDS Structure of MLOC_57890
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57890.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g10540.4 |
+1 |
3e-121 |
358 |
206/262 (79%) |
13112.m01117 protein OsMADS13 - MADS-box family gene with MIKCc type-box, expressed |
TAIR PP10 |
AT3G58780.1 |
+1 |
8e-78 |
245 |
120/181 (66%) |
| Symbols: SHP1, AGL1 | K-box region and MADS-box transcription factor family protein | chr3:21739150-21741766 FORWARD LENGTH=248 |