MLOC_57883 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.08298.140799.347257.80847
LEAShoots from the seedlings (10 cm shoot stage)8.665339.15249.437746.31106
INF1Young developing inflorescences (5mm)9.9709510.198811.70266.67925
INF2Developing inflorescences (1-1.5 cm)7.36229.355959.611897.38135
ROORoots from the seedlings (10 cm shoot stage)9.723319.801218.724679.16821
NODDeveloping tillers at six leaf stage, 3rd internode5.823455.968937.4813217.5409
CAR5Developing grain, bracts removed (5 DPA)7.235057.305949.244945.6583
CAR15Developing grain, bracts removed (15 DPA)2.072482.05672.091763.48372



CDS Structure of MLOC_57883






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57883.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57883.4CUST_12810_PI427708083AvailableAvailablecontig_42179 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g13590.1 +1 9e-30 120 56/64 (88%) 13107.m01416 protein expressed protein
TAIR PP10 AT2G37860.3 +1 5e-26 108 49/64 (77%) | Symbols: LCD1 | Protein of unknown function (DUF3411) | chr2:15856952-15858793 FORWARD LENGTH=432