MLOC_57872 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.444130.405729.94128.668
LEAShoots from the seedlings (10 cm shoot stage)24.204720.720123.517419.3299
INF1Young developing inflorescences (5mm)36.337842.615944.11532.4808
INF2Developing inflorescences (1-1.5 cm)41.688253.97446.748948.6612
ROORoots from the seedlings (10 cm shoot stage)30.379541.666234.966145.7959
NODDeveloping tillers at six leaf stage, 3rd internode39.152943.529534.5538140.081
CAR5Developing grain, bracts removed (5 DPA)53.766647.036552.39444.8839
CAR15Developing grain, bracts removed (15 DPA)114.555128.64985.5434243.391



CDS Structure of MLOC_57872






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57872.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374218NoneNoneNoneNone
MLOC_57872.1CUST_3841_PI427708080AvailableAvailablecontig_42170 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g51000.2 +1 0.0 919 533/594 (90%) 13103.m05543 protein 3,4-dihydroxy-2-butanone kinase, putative, expressed
TAIR PP10 AT3G17770.1 +1 0.0 771 431/572 (75%) Dihydroxyacetone kinase | chr3:6081973-6085957 REVERSE LENGTH=595