MLOC_5785 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1264970.03925100.0789596
LEAShoots from the seedlings (10 cm shoot stage)00.14646800.197918
INF1Young developing inflorescences (5mm)00.073910200.0707395
INF2Developing inflorescences (1-1.5 cm)0.09466340.060741800.10558
ROORoots from the seedlings (10 cm shoot stage)0.2313410.04510130.1145960.0869606
NODDeveloping tillers at six leaf stage, 3rd internode000.03042040.0665525
CAR5Developing grain, bracts removed (5 DPA)1.878191.885011.565491.71203
CAR15Developing grain, bracts removed (15 DPA)670.988642.639605.9751498.09



CDS Structure of MLOC_5785






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5785.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5785.1CUST_7968_PI427708083AvailableAvailablecontig_136693 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g34570.1 -3 1e-163 470 238/327 (73%) 13107.m03521 protein FAD dependent oxidoreductase domain containing protein, expressed
TAIR PP10 AT5G54770.1 -3 1e-138 406 200/283 (71%) | Symbols: THI1, TZ, THI4 | thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) | chr5:22246634-22247891 FORWARD LENGTH=349