MLOC_57847 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.661314.917314.35813.9558
LEAShoots from the seedlings (10 cm shoot stage)10.04435.704556.911225.77388
INF1Young developing inflorescences (5mm)9.398099.93499.51067.27473
INF2Developing inflorescences (1-1.5 cm)9.104359.703628.855389.11561
ROORoots from the seedlings (10 cm shoot stage)15.743813.008711.576513.1854
NODDeveloping tillers at six leaf stage, 3rd internode15.780716.635814.893944.4643
CAR5Developing grain, bracts removed (5 DPA)10.320711.546110.67089.19571
CAR15Developing grain, bracts removed (15 DPA)7.679437.236537.4861315.812



CDS Structure of MLOC_57847






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57847.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57847.2CUST_13760_PI427708080AvailableAvailablecontig_42149 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g53450.1 -2 8e-173 508 283/425 (67%) 13104.m05500 protein expressed protein
TAIR PP10 AT5G54920.1 -2 3e-31 129 137/500 (27%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22302111-22305576 FORWARD LENGTH=517