MLOC_57824 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.033312.821811.421615.6092
LEAShoots from the seedlings (10 cm shoot stage)2.922631.259542.658621.92596
INF1Young developing inflorescences (5mm)11.325914.81715.330412.9724
INF2Developing inflorescences (1-1.5 cm)9.9069210.232910.930612.3217
ROORoots from the seedlings (10 cm shoot stage)7.724818.129959.2955610.1336
NODDeveloping tillers at six leaf stage, 3rd internode1.859073.171983.753179.60615
CAR5Developing grain, bracts removed (5 DPA)7.525618.454946.663038.25257
CAR15Developing grain, bracts removed (15 DPA)1.81021.619191.544014.42766



CDS Structure of MLOC_57824






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57824.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357826NoneNoneNoneNone
MLOC_57824.1CUST_3834_PI427708080AvailableAvailablecontig_42130 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g15290.2 +1 2e-64 207 104/114 (91%) 13101.m01689 protein ribosomal L18p/L5e family protein, putative, expressed
TAIR PP10 AT5G27820.1 +1 3e-51 172 85/114 (75%) Ribosomal L18p/L5e family protein | chr5:9860584-9860928 FORWARD LENGTH=114