MLOC_57803 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5702280.160910.3588160.371397
LEAShoots from the seedlings (10 cm shoot stage)00.1485050.1345790.184734
INF1Young developing inflorescences (5mm)3.290462.184454.050172.94623
INF2Developing inflorescences (1-1.5 cm)23.836620.641321.363126.9782
ROORoots from the seedlings (10 cm shoot stage)0.6629650.4351090.3732820.685332
NODDeveloping tillers at six leaf stage, 3rd internode0.1010320.1475110.02903930.49442
CAR5Developing grain, bracts removed (5 DPA)1.611331.850791.824352.06085
CAR15Developing grain, bracts removed (15 DPA)0.8895351.124720.8807422.58569



CDS Structure of MLOC_57803






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57803.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57803.3CUST_7961_PI427708083AvailableAvailablecontig_42106 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g06750.1 -2 3e-47 163 82/116 (71%) 13106.m00697 protein OsMADS5 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT5G15800.1 -2 3e-21 92 51/115 (44%) | Symbols: SEP1, AGL2 | K-box region and MADS-box transcription factor family protein | chr5:5151594-5153767 REVERSE LENGTH=251