MLOC_5780 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8898110.6194330.7602290.854459
LEAShoots from the seedlings (10 cm shoot stage)0.61278000.547133
INF1Young developing inflorescences (5mm)0.06500090.2781420.375490.295778
INF2Developing inflorescences (1-1.5 cm)0.1212820.30190.4163330.381526
ROORoots from the seedlings (10 cm shoot stage)1.4850.3876900.868553
NODDeveloping tillers at six leaf stage, 3rd internode0.3024770.2409270.7314130.89934
CAR5Developing grain, bracts removed (5 DPA)0.4690610.4959730.5557360.616712
CAR15Developing grain, bracts removed (15 DPA)0.02714010.03267640.04005410.100396



CDS Structure of MLOC_5780






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5780.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5780.1CUST_7960_PI427708083AvailableAvailablecontig_136687 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g38610.1 -3 4e-75 246 140/174 (80%) 13112.m03980 protein lectin-like receptor kinase, putative, expressed
TAIR PP10 AT3G55550.1 -3 3e-32 127 67/139 (48%) Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684