MLOC_57784 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.8473238.841931.595334.9918
LEAShoots from the seedlings (10 cm shoot stage)45.640746.153734.424441.3747
INF1Young developing inflorescences (5mm)108.31398.39198.233392.4624
INF2Developing inflorescences (1-1.5 cm)147.747130.509127.508166.524
ROORoots from the seedlings (10 cm shoot stage)9.3582814.230113.515720.651
NODDeveloping tillers at six leaf stage, 3rd internode17.27619.590919.236483.4981
CAR5Developing grain, bracts removed (5 DPA)58.571757.496864.866967.8728
CAR15Developing grain, bracts removed (15 DPA)28.222528.244826.508870.0241



CDS Structure of MLOC_57784






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57784.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57784.1CUST_13752_PI427708080AvailableAvailablecontig_42090 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g44390.1 -2 0.0 923 493/554 (89%) 13112.m04698 protein RecF/RecN/SMC N terminal domain containing protein, expressed
TAIR PP10 AT3G54670.3 -2 0.0 860 507/892 (57%) | Symbols: TTN8 | Structural maintenance of chromosomes (SMC) family protein | chr3:20235818-20243701 FORWARD LENGTH=1239