MLOC_57760 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains66.012163.985142.547122.786
LEAShoots from the seedlings (10 cm shoot stage)123.02871.178461.828472.4849
INF1Young developing inflorescences (5mm)129.664126.059110.5395.8757
INF2Developing inflorescences (1-1.5 cm)91.5728104.34890.844199.9841
ROORoots from the seedlings (10 cm shoot stage)58.9941121.79978.7032121.89
NODDeveloping tillers at six leaf stage, 3rd internode79.863573.255737.9985220.942
CAR5Developing grain, bracts removed (5 DPA)158.045137.202149.525134.95
CAR15Developing grain, bracts removed (15 DPA)49.882344.805748.793499.0006



CDS Structure of MLOC_57760






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57760.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57760.2CUST_13746_PI427708080AvailableAvailablecontig_42075 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g01380.1 -1 0.0 3036 1601/1680 (95%) 13111.m00048 protein clathrin heavy chain, putative, expressed
TAIR PP10 AT3G11130.1 -1 0.0 2888 1499/1680 (89%) Clathrin, heavy chain | chr3:3482575-3491667 REVERSE LENGTH=1705