MLOC_57742 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.08135451.407860.8135460.800128
LEAShoots from the seedlings (10 cm shoot stage)2.305074.073916.773323.17196
INF1Young developing inflorescences (5mm)0.1155010.06411490.074020.0686225
INF2Developing inflorescences (1-1.5 cm)0.2435150.2590130.2769160.264167
ROORoots from the seedlings (10 cm shoot stage)0.5723370.7433371.648720.822288
NODDeveloping tillers at six leaf stage, 3rd internode0.1881540.039405500.138606
CAR5Developing grain, bracts removed (5 DPA)0.8641120.5904660.5908120.608143
CAR15Developing grain, bracts removed (15 DPA)0.6105520.3842410.5848211.16329



CDS Structure of MLOC_57742






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57742.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57742.1CUST_7951_PI427708083AvailableAvailablecontig_42050 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g35260.2 +1 2e-103 330 167/253 (66%) 13107.m03604 protein TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed
TAIR PP10 AT4G23180.1 +1 6e-39 151 92/248 (37%) | Symbols: CRK10, RLK4 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10 | chr4:12138171-12140780 FORWARD LENGTH=669