MLOC_57740 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4289440.4375970.2887610.404937
LEAShoots from the seedlings (10 cm shoot stage)1.665041.31651.111481.14185
INF1Young developing inflorescences (5mm)0.1873760.07882050.02136070.0894661
INF2Developing inflorescences (1-1.5 cm)0.4416990.4382520.6576790.585073
ROORoots from the seedlings (10 cm shoot stage)0.3985930.249870.2905130.324746
NODDeveloping tillers at six leaf stage, 3rd internode0.6219960.3606970.08981070.879674
CAR5Developing grain, bracts removed (5 DPA)3.718273.888073.505073.98816
CAR15Developing grain, bracts removed (15 DPA)0.1287810.1118190.06919470.283211



CDS Structure of MLOC_57740






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57740.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57740.1CUST_13741_PI427708080AvailableAvailablecontig_42047 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g47470.1 +2 0.0 631 341/496 (69%) 13103.m05105 protein STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast
TAIR PP10 AT4G14480.1 +2 7e-142 428 240/489 (49%) Protein kinase superfamily protein | chr4:8330081-8331544 REVERSE LENGTH=487