MLOC_5773 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 30.5191 | 22.2103 | 26.3959 | 30.7963 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 20.1694 | 18.9108 | 21.4681 | 19.9083 |
| INF1 | Young developing inflorescences (5mm) | 10.4778 | 10.0553 | 9.34565 | 9.61759 |
| INF2 | Developing inflorescences (1-1.5 cm) | 8.92551 | 8.40921 | 9.088 | 11.0228 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 20.8214 | 26.0728 | 21.1502 | 38.4177 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 39.4347 | 36.032 | 28.3202 | 132.292 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 23.5141 | 22.2929 | 24.6387 | 27.0128 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.28739 | 4.22195 | 4.13778 | 11.2989 |
CDS Structure of MLOC_5773
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5773.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g40040.1 |
+1 |
3e-88 |
283 |
196/368 (53%) |
13105.m04223 protein expressed protein |
| TAIR PP10 |
AT3G51580.1 |
+1 |
4e-19 |
90 |
78/287 (27%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). | chr3:19131167-19133016 REVERSE LENGTH=390 |
