MLOC_57719 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains52.707542.168439.460644.7303
LEAShoots from the seedlings (10 cm shoot stage)80.112846.833480.306359.5783
INF1Young developing inflorescences (5mm)16.948412.739512.560912.2921
INF2Developing inflorescences (1-1.5 cm)5.356087.165777.517797.38211
ROORoots from the seedlings (10 cm shoot stage)2.094075.128376.141825.83891
NODDeveloping tillers at six leaf stage, 3rd internode13.279822.869918.653668.8145
CAR5Developing grain, bracts removed (5 DPA)22.983626.512225.929125.5581
CAR15Developing grain, bracts removed (15 DPA)0.8033560.6030340.4280541.57449



CDS Structure of MLOC_57719






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57719.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369928NoneNoneNoneNone
MLOC_57719.1CUST_3815_PI427708080AvailableAvailablecontig_42027 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g60100.1 +1 3e-75 235 113/129 (88%) 13103.m06597 protein 50S ribosomal protein L17, putative, expressed
TAIR PP10 AT3G54210.1 +1 6e-70 221 108/125 (86%) Ribosomal protein L17 family protein | chr3:20067672-20068385 REVERSE LENGTH=211