MLOC_57715 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.037330.1391330.1313580.103316
LEAShoots from the seedlings (10 cm shoot stage)0.06276920.1632870.05512190.0797896
INF1Young developing inflorescences (5mm)0.0849990.08758940.08474440.0682245
INF2Developing inflorescences (1-1.5 cm)0.08633930.06717370.0193670.0710875
ROORoots from the seedlings (10 cm shoot stage)0.1347170.03817690.1171830.0738648
NODDeveloping tillers at six leaf stage, 3rd internode0.01545060.07032890.07749670.220878
CAR5Developing grain, bracts removed (5 DPA)2.61612.818663.24742.58436
CAR15Developing grain, bracts removed (15 DPA)0.05533520.0192730.05398370.0938998



CDS Structure of MLOC_57715






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57715.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57715.1CUST_13737_PI427708080AvailableAvailablecontig_42022 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g15020.2 +2 0.0 683 341/482 (71%) 13101.m01663 protein lissencephaly type-1-like homology motif, putative, expressed
TAIR PP10 AT3G16830.1 +2 5e-165 519 259/455 (57%) | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731709-5737531 FORWARD LENGTH=1131