MLOC_57706 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains38.985136.280836.695337.804
LEAShoots from the seedlings (10 cm shoot stage)61.318354.095364.462250.8776
INF1Young developing inflorescences (5mm)23.315330.40631.832824.4701
INF2Developing inflorescences (1-1.5 cm)26.787528.713430.030631.4891
ROORoots from the seedlings (10 cm shoot stage)83.058988.747171.3291103.73
NODDeveloping tillers at six leaf stage, 3rd internode265.223248.344191.4773.603
CAR5Developing grain, bracts removed (5 DPA)24.687925.350322.173724.1824
CAR15Developing grain, bracts removed (15 DPA)11.667212.252110.574527.5644



CDS Structure of MLOC_57706






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57706.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373267NoneNoneNoneNone
MLOC_57706.1CUST_3811_PI427708080AvailableAvailablecontig_42011 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g37420.1 +2 5e-130 377 183/192 (95%) 13102.m04097 protein ras-related protein, putative, expressed
TAIR PP10 AT4G17170.1 +2 3e-126 367 180/189 (95%) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211