MLOC_57705 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.578428.563866.927977.4007
LEAShoots from the seedlings (10 cm shoot stage)3.557410.4175670.7999211.47071
INF1Young developing inflorescences (5mm)24.364424.812323.814920.897
INF2Developing inflorescences (1-1.5 cm)33.130539.894931.992139.4189
ROORoots from the seedlings (10 cm shoot stage)1.969495.231683.971985.95037
NODDeveloping tillers at six leaf stage, 3rd internode0.2570270.3115740.457831.17078
CAR5Developing grain, bracts removed (5 DPA)2.989771.984342.428432.36093
CAR15Developing grain, bracts removed (15 DPA)1.536480.4554642.29042.92532



CDS Structure of MLOC_57705






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57705.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57705.1CUST_13734_PI427708080AvailableAvailablecontig_42008 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58960.1 -1 0.0 1580 846/1066 (79%) 13104.m06211 protein regulator of chromosome condensation, putative, expressed
TAIR PP10 AT5G42140.1 -1 0.0 1013 598/1098 (54%) Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:16837547-16841640 REVERSE LENGTH=1073