MLOC_57700 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.09753540.04872830.136036
LEAShoots from the seedlings (10 cm shoot stage)00.24136500.296228
INF1Young developing inflorescences (5mm)0.4574110.4227160.3957950.413193
INF2Developing inflorescences (1-1.5 cm)10.75357.799297.9309311.1025
ROORoots from the seedlings (10 cm shoot stage)0.1310310.0332820.1050730.0849401
NODDeveloping tillers at six leaf stage, 3rd internode0.08196860.009082270.04831730.0727754
CAR5Developing grain, bracts removed (5 DPA)271.718294.483302.14345.746
CAR15Developing grain, bracts removed (15 DPA)26.770628.77227.174874.9408



CDS Structure of MLOC_57700






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57700.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375322NoneNoneNoneNone
MLOC_57700.1CUST_3810_PI427708080AvailableAvailablecontig_42002 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g11414.2 +2 2e-136 396 213/274 (78%) 13105.m01236 protein OsMADS58 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT4G18960.1 +2 2e-89 275 142/238 (60%) | Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10383917-10388272 FORWARD LENGTH=252