MLOC_57691 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.54979.200139.7602610.7675
LEAShoots from the seedlings (10 cm shoot stage)4.511955.451245.633814.9331
INF1Young developing inflorescences (5mm)20.065621.70921.570120.2461
INF2Developing inflorescences (1-1.5 cm)19.898717.161918.67322.535
ROORoots from the seedlings (10 cm shoot stage)7.6444510.230111.829713.7406
NODDeveloping tillers at six leaf stage, 3rd internode0.5378290.5408062.071423.03092
CAR5Developing grain, bracts removed (5 DPA)11.814811.894811.691513.1686
CAR15Developing grain, bracts removed (15 DPA)3.933723.972783.5903810.0372



CDS Structure of MLOC_57691






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57691.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364720NoneNoneNoneNone
MLOC_57691.2CUST_3808_PI427708080AvailableAvailablecontig_41994 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g35060.1 -3 0.0 834 414/480 (86%) 13102.m03797 protein RNA methyltransferase protein, putative, expressed
TAIR PP10 AT3G26410.1 -3 0.0 652 328/479 (68%) | Symbols: TRM11, AtTRM11 | methyltransferases;nucleic acid binding | chr3:9669508-9671273 REVERSE LENGTH=477