MLOC_57686 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.748653.982013.915224.39852
LEAShoots from the seedlings (10 cm shoot stage)0.2177540.09292250.1672450.144696
INF1Young developing inflorescences (5mm)0.0225618000.0213833
INF2Developing inflorescences (1-1.5 cm)0.062670.2712290.3295860.239286
ROORoots from the seedlings (10 cm shoot stage)2.748635.940044.223536.59716
NODDeveloping tillers at six leaf stage, 3rd internode0.06542030.1030590.3233760.453536
CAR5Developing grain, bracts removed (5 DPA)0.1216530.1130310.05256480.0999467
CAR15Developing grain, bracts removed (15 DPA)2.931592.615243.017546.78652



CDS Structure of MLOC_57686






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57686.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57686.2CUST_13731_PI427708080AvailableAvailablecontig_41989 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g37770.1 -3 1e-119 384 232/558 (42%) 13112.m03888 protein RGH1A, putative, expressed
TAIR PP10 AT5G43470.2 -3 3e-43 167 154/534 (29%) | Symbols: RPP8, HRT, RCY1 | Disease resistance protein (CC-NBS-LRR class) family | chr5:17463130-17466658 REVERSE LENGTH=908