MLOC_57684 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.36855.506344.807756.42846
LEAShoots from the seedlings (10 cm shoot stage)22.387132.783241.255931.2222
INF1Young developing inflorescences (5mm)5.694125.240664.281134.82418
INF2Developing inflorescences (1-1.5 cm)14.11766.2313610.275911.8814
ROORoots from the seedlings (10 cm shoot stage)28.688622.186724.356933.0194
NODDeveloping tillers at six leaf stage, 3rd internode27.882530.056767.7393132.814
CAR5Developing grain, bracts removed (5 DPA)0.7789320.2585590.1379060.416446
CAR15Developing grain, bracts removed (15 DPA)0.4718670.4825670.4012151.21549



CDS Structure of MLOC_57684






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57684.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249414.1NoneNoneNoneNone
MLOC_57684.2CUST_3806_PI427708080AvailableAvailablecontig_41989 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g51260.1 +3 4e-127 392 295/517 (57%) 13106.m05530 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT5G37260.1 +3 5e-33 130 104/276 (38%) | Symbols: RVE2, CIR1 | Homeodomain-like superfamily protein | chr5:14751344-14752972 REVERSE LENGTH=287