MLOC_57642 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.269747.675198.163677.222
LEAShoots from the seedlings (10 cm shoot stage)10.491815.495416.274311.9623
INF1Young developing inflorescences (5mm)17.28720.839320.35415.625
INF2Developing inflorescences (1-1.5 cm)17.104218.069417.707417.931
ROORoots from the seedlings (10 cm shoot stage)11.91829.529948.7835811.9053
NODDeveloping tillers at six leaf stage, 3rd internode6.444119.9906211.483735.5171
CAR5Developing grain, bracts removed (5 DPA)25.286324.452424.166221.8169
CAR15Developing grain, bracts removed (15 DPA)205.51207.094189.751435.689



CDS Structure of MLOC_57642






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57642.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57642.1CUST_13727_PI427708080AvailableAvailablecontig_41950 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48970.1 -3 2e-161 478 275/530 (52%) 13105.m05232 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT3G15070.2 -3 1e-32 132 124/479 (26%) RING/U-box superfamily protein | chr3:5070472-5072344 REVERSE LENGTH=486