- Predicted Gene MLOC_57642
MLOC_57642 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_57642_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 6.26974 | 7.67519 | 8.16367 | 7.222 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 10.4918 | 15.4954 | 16.2743 | 11.9623 |
INF1 | Young developing inflorescences (5mm) | 17.287 | 20.8393 | 20.354 | 15.625 |
INF2 | Developing inflorescences (1-1.5 cm) | 17.1042 | 18.0694 | 17.7074 | 17.931 |
ROO | Roots from the seedlings (10 cm shoot stage) | 11.9182 | 9.52994 | 8.78358 | 11.9053 |
NOD | Developing tillers at six leaf stage, 3rd internode | 6.44411 | 9.99062 | 11.4837 | 35.5171 |
CAR5 | Developing grain, bracts removed (5 DPA) | 25.2863 | 24.4524 | 24.1662 | 21.8169 |
CAR15 | Developing grain, bracts removed (15 DPA) | 205.51 | 207.094 | 189.751 | 435.689 |
CDS Structure of MLOC_57642
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57642.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g48970.1 |
-3 |
2e-161 |
478 |
275/530 (52%) |
13105.m05232 protein zinc finger, C3HC4 type domain containing protein, expressed |
TAIR PP10 |
AT3G15070.2 |
-3 |
1e-32 |
132 |
124/479 (26%) |
RING/U-box superfamily protein | chr3:5070472-5072344 REVERSE LENGTH=486 |