MLOC_57641 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.066550.4840840.5498720.621486
LEAShoots from the seedlings (10 cm shoot stage)0.2673970.08516210.1895880.154325
INF1Young developing inflorescences (5mm)1.50271.75011.77111.37657
INF2Developing inflorescences (1-1.5 cm)1.578451.796941.998041.85874
ROORoots from the seedlings (10 cm shoot stage)0.2755330.5069770.6177310.523949
NODDeveloping tillers at six leaf stage, 3rd internode0.05253350.07867720.06581050.228429
CAR5Developing grain, bracts removed (5 DPA)0.5059740.6485971.020310.652691
CAR15Developing grain, bracts removed (15 DPA)0.2918790.3669040.4787070.829135



CDS Structure of MLOC_57641






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57641.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57641.1CUST_13726_PI427708080AvailableAvailablecontig_41950 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g34630.1 -2 4e-137 426 252/403 (63%) 13101.m03495 protein retrotransposon protein, putative, Ty1-copia subclass, expressed
TAIR PP10None-----