- Predicted Gene MLOC_57641
MLOC_57641 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 1.06655 | 0.484084 | 0.549872 | 0.621486 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.267397 | 0.0851621 | 0.189588 | 0.154325 |
INF1 | Young developing inflorescences (5mm) | 1.5027 | 1.7501 | 1.7711 | 1.37657 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.57845 | 1.79694 | 1.99804 | 1.85874 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.275533 | 0.506977 | 0.617731 | 0.523949 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0525335 | 0.0786772 | 0.0658105 | 0.228429 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.505974 | 0.648597 | 1.02031 | 0.652691 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.291879 | 0.366904 | 0.478707 | 0.829135 |
CDS Structure of MLOC_57641
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57641.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g34630.1 |
-2 |
4e-137 |
426 |
252/403 (63%) |
13101.m03495 protein retrotransposon protein, putative, Ty1-copia subclass, expressed |
TAIR PP10 | None | - | - | - | - | - |