MLOC_57640 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains50.138938.702441.758655.518
LEAShoots from the seedlings (10 cm shoot stage)21.36714.934698.7790910.2044
INF1Young developing inflorescences (5mm)16.917412.927814.615115.3122
INF2Developing inflorescences (1-1.5 cm)12.311412.984113.932918.1246
ROORoots from the seedlings (10 cm shoot stage)47.744331.003334.053651.2411
NODDeveloping tillers at six leaf stage, 3rd internode32.575231.486921.557186.676
CAR5Developing grain, bracts removed (5 DPA)5.365415.436086.025177.60553
CAR15Developing grain, bracts removed (15 DPA)3.048962.28442.711898.02039



CDS Structure of MLOC_57640






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57640.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252059.1NoneNoneNoneNone
MLOC_57640.2CUST_3799_PI427708080AvailableAvailablecontig_41950 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48980.1 +2 1e-142 408 203/216 (94%) 13105.m05233 protein ras-related protein, putative, expressed
TAIR PP10 AT5G60860.1 +2 2e-136 391 195/215 (91%) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217