- Predicted Gene MLOC_57640
MLOC_57640 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 50.1389 | 38.7024 | 41.7586 | 55.518 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 21.3671 | 4.93469 | 8.77909 | 10.2044 |
INF1 | Young developing inflorescences (5mm) | 16.9174 | 12.9278 | 14.6151 | 15.3122 |
INF2 | Developing inflorescences (1-1.5 cm) | 12.3114 | 12.9841 | 13.9329 | 18.1246 |
ROO | Roots from the seedlings (10 cm shoot stage) | 47.7443 | 31.0033 | 34.0536 | 51.2411 |
NOD | Developing tillers at six leaf stage, 3rd internode | 32.5752 | 31.4869 | 21.5571 | 86.676 |
CAR5 | Developing grain, bracts removed (5 DPA) | 5.36541 | 5.43608 | 6.02517 | 7.60553 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.04896 | 2.2844 | 2.71189 | 8.02039 |
CDS Structure of MLOC_57640
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57640.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g48980.1 |
+2 |
1e-142 |
408 |
203/216 (94%) |
13105.m05233 protein ras-related protein, putative, expressed |
TAIR PP10 |
AT5G60860.1 |
+2 |
2e-136 |
391 |
195/215 (91%) |
| Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217 |