MLOC_57635 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3955750.5892010.5317440.4033
LEAShoots from the seedlings (10 cm shoot stage)0.3238050.139680.138240.155821
INF1Young developing inflorescences (5mm)1.395531.215021.582970.912343
INF2Developing inflorescences (1-1.5 cm)2.597081.243381.663721.65101
ROORoots from the seedlings (10 cm shoot stage)0.2251150.4598120.495130.374267
NODDeveloping tillers at six leaf stage, 3rd internode0.5764870.3416680.3363140.857162
CAR5Developing grain, bracts removed (5 DPA)1.210730.8803271.082570.788532
CAR15Developing grain, bracts removed (15 DPA)1.518351.32351.254822.53417



CDS Structure of MLOC_57635






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57635.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57635.1NoneAvailableAvailablecontig_41943 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g34810.1 -2 4e-71 99 55/122 (45%) 13104.m03382 protein transposon protein, putative, Pong sub-class
TAIR PP10 AT2G13770.1 -2 5e-25 109 56/122 (46%) CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343