- Predicted Gene MLOC_57635
MLOC_57635 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_57635_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 0.395575 | 0.589201 | 0.531744 | 0.4033 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.323805 | 0.13968 | 0.13824 | 0.155821 |
INF1 | Young developing inflorescences (5mm) | 1.39553 | 1.21502 | 1.58297 | 0.912343 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.59708 | 1.24338 | 1.66372 | 1.65101 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.225115 | 0.459812 | 0.49513 | 0.374267 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.576487 | 0.341668 | 0.336314 | 0.857162 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.21073 | 0.880327 | 1.08257 | 0.788532 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.51835 | 1.3235 | 1.25482 | 2.53417 |
CDS Structure of MLOC_57635
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57635.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g34810.1 |
-2 |
4e-71 |
99 |
55/122 (45%) |
13104.m03382 protein transposon protein, putative, Pong sub-class |
TAIR PP10 |
AT2G13770.1 |
-2 |
5e-25 |
109 |
56/122 (46%) |
CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343 |