MLOC_57634 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains300.265172.898174.493174.236
LEAShoots from the seedlings (10 cm shoot stage)90.204651.773870.817949.1376
INF1Young developing inflorescences (5mm)251.315239.491259.196176.517
INF2Developing inflorescences (1-1.5 cm)175.239167.989202.169161.922
ROORoots from the seedlings (10 cm shoot stage)206174.914214.462160.826
NODDeveloping tillers at six leaf stage, 3rd internode19.915312.996564.253551.1968
CAR5Developing grain, bracts removed (5 DPA)128.194145.665150.183108.197
CAR15Developing grain, bracts removed (15 DPA)67.215264.422859.0281127.557



CDS Structure of MLOC_57634






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57634.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252365.1NoneNoneNoneNone
MLOC_57634.1CUST_3798_PI427708080AvailableAvailablecontig_41943 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g27190.1 -3 6e-70 226 119/133 (89%) 13110.m02328 protein 40S ribosomal protein S17, putative, expressed
TAIR PP10 AT5G04800.4 -3 2e-57 192 98/137 (72%) Ribosomal S17 family protein | chr5:1389217-1389642 FORWARD LENGTH=141