MLOC_57607 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.531912.171112.034311.6995
LEAShoots from the seedlings (10 cm shoot stage)6.632212.644713.615113.78396
INF1Young developing inflorescences (5mm)21.560716.571416.169815.0355
INF2Developing inflorescences (1-1.5 cm)10.694111.975612.471712.4433
ROORoots from the seedlings (10 cm shoot stage)3.916547.975489.024938.97372
NODDeveloping tillers at six leaf stage, 3rd internode0.4712710.3248460.9693121.43276
CAR5Developing grain, bracts removed (5 DPA)12.230811.677112.823711.6623
CAR15Developing grain, bracts removed (15 DPA)1.817671.664811.985513.96916



CDS Structure of MLOC_57607






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57607.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249175.1NoneNoneNoneNone
MLOC_57607.1CUST_3790_PI427708080AvailableAvailablecontig_41920 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g34460.1 -2 0.0 911 472/565 (84%) 13105.m03584 protein OsDegp7 - Putative Deg protease homologue, expressed
TAIR PP10 AT5G36950.1 -2 0.0 796 393/479 (82%) | Symbols: DegP10 | DegP protease 10 | chr5:14594992-14598216 FORWARD LENGTH=586