MLOC_57604 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.2682.968873.397413.31704
LEAShoots from the seedlings (10 cm shoot stage)19.72472.826021.831146.915
INF1Young developing inflorescences (5mm)0.6635390.2635510.3495960.383448
INF2Developing inflorescences (1-1.5 cm)0.1444620.1597080.1992120.196722
ROORoots from the seedlings (10 cm shoot stage)11.53521.145462.825433.21253
NODDeveloping tillers at six leaf stage, 3rd internode3.219181.897142.697546.28052
CAR5Developing grain, bracts removed (5 DPA)5.418155.594813.234485.09388
CAR15Developing grain, bracts removed (15 DPA)5.698376.243913.7752614.1914



CDS Structure of MLOC_57604






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57604.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359540NoneNoneNoneNone
MLOC_57604.1CUST_312_PI427708083AvailableAvailablecontig_41918 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g23140.1 -1 3e-69 233 152/238 (64%) 13105.m02345 protein retrotransposon protein, putative, LINE subclass, expressed
TAIR PP10 AT4G27670.1 -1 8e-22 97 72/237 (30%) | Symbols: HSP21 | heat shock protein 21 | chr4:13819048-13819895 REVERSE LENGTH=227