MLOC_57581 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.332952.815850.057148.0111
LEAShoots from the seedlings (10 cm shoot stage)52.094640.44737.66839.4839
INF1Young developing inflorescences (5mm)77.559670.22557.873958.0039
INF2Developing inflorescences (1-1.5 cm)61.538564.475357.411668.3168
ROORoots from the seedlings (10 cm shoot stage)20.628842.018930.008149.5538
NODDeveloping tillers at six leaf stage, 3rd internode29.09930.313626.2457109.04
CAR5Developing grain, bracts removed (5 DPA)99.224388.069296.449892.235
CAR15Developing grain, bracts removed (15 DPA)40.866638.285738.344988.0624



CDS Structure of MLOC_57581






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57581.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57581.1CUST_13717_PI427708080AvailableAvailablecontig_41888 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g36940.2 -1 0.0 1600 997/1613 (62%) 13107.m03795 protein eukaryotic translation initiation factor 4G, putative, expressed
TAIR PP10 AT3G60240.2 -1 0.0 798 540/1216 (44%) | Symbols: EIF4G, CUM2 | eukaryotic translation initiation factor 4G | chr3:22261842-22268295 FORWARD LENGTH=1723