MLOC_57578 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains271.321196.563214.222227.558
LEAShoots from the seedlings (10 cm shoot stage)142.6198.3976125.522106.414
INF1Young developing inflorescences (5mm)135.162141.25147.809122.005
INF2Developing inflorescences (1-1.5 cm)111.014130.294130.328137.468
ROORoots from the seedlings (10 cm shoot stage)260.311220.016202.048282.528
NODDeveloping tillers at six leaf stage, 3rd internode232.421243.648132.186716.22
CAR5Developing grain, bracts removed (5 DPA)163.532165.731156.196163.707
CAR15Developing grain, bracts removed (15 DPA)33.217530.34429.747276.9997



CDS Structure of MLOC_57578






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57578.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253013.1NoneNoneNoneNone
MLOC_57578.2CUST_3785_PI427708080AvailableAvailablecontig_41886 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g38630.2 +2 1e-104 313 180/182 (99%) 13105.m04057 protein ras-related protein, putative, expressed
TAIR PP10 AT3G46060.3 +2 7e-99 297 171/183 (93%) | Symbols: ARA3 | RAB GTPase homolog 8A | chr3:16917908-16919740 FORWARD LENGTH=216