MLOC_57560 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.631172.474511.99662.638
LEAShoots from the seedlings (10 cm shoot stage)2.159691.55442.169821.56326
INF1Young developing inflorescences (5mm)0.9365740.8305550.6621950.746208
INF2Developing inflorescences (1-1.5 cm)0.5836680.4481320.647250.685671
ROORoots from the seedlings (10 cm shoot stage)9.435746.196535.974047.41135
NODDeveloping tillers at six leaf stage, 3rd internode0.3745550.5658460.877471.83052
CAR5Developing grain, bracts removed (5 DPA)8.676089.817378.9535510.0831
CAR15Developing grain, bracts removed (15 DPA)0.5815260.7450510.452731.68082



CDS Structure of MLOC_57560






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57560.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57560.3CUST_13713_PI427708080AvailableAvailablecontig_41868 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08110.1 +1 4e-145 421 218/267 (82%) 13103.m00921 protein hydrolase protein, putative, expressed
TAIR PP10 AT5G09430.1 +1 5e-53 182 104/271 (38%) alpha/beta-Hydrolases superfamily protein | chr5:2932162-2933362 FORWARD LENGTH=311