MLOC_57554 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.733438.071535.265738.5122
LEAShoots from the seedlings (10 cm shoot stage)32.346140.025138.54336.6995
INF1Young developing inflorescences (5mm)98.250989.943282.120583.3243
INF2Developing inflorescences (1-1.5 cm)83.083983.72781.7633101.946
ROORoots from the seedlings (10 cm shoot stage)18.532639.103631.54551.8819
NODDeveloping tillers at six leaf stage, 3rd internode4.94497.0150418.46937.9922
CAR5Developing grain, bracts removed (5 DPA)85.117684.374292.438396.7322
CAR15Developing grain, bracts removed (15 DPA)20.153722.696818.010450.7552



CDS Structure of MLOC_57554






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57554.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367982NoneNoneNoneNone
MLOC_57554.5NoneAvailableAvailablecontig_41863 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g52960.1 -2 4e-84 288 143/205 (70%) 13104.m05444 protein nucleolin, putative, expressed
TAIR PP10 AT1G48920.1 -2 1e-56 205 115/212 (54%) | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 | chr1:18098186-18101422 FORWARD LENGTH=557