- Predicted Gene MLOC_57516
MLOC_57516 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 7.16662 | 9.31094 | 10.8242 | 8.40696 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 19.9693 | 10.5174 | 8.33287 | 10.6171 |
INF1 | Young developing inflorescences (5mm) | 14.1415 | 13.8674 | 13.4541 | 10.7951 |
INF2 | Developing inflorescences (1-1.5 cm) | 14.9833 | 16.4651 | 16.022 | 16.0267 |
ROO | Roots from the seedlings (10 cm shoot stage) | 5.40786 | 9.24324 | 7.9757 | 9.25363 |
NOD | Developing tillers at six leaf stage, 3rd internode | 15.4061 | 20.7281 | 12.655 | 59.3744 |
CAR5 | Developing grain, bracts removed (5 DPA) | 14.6242 | 15.8845 | 16.224 | 13.9345 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.74009 | 3.85637 | 4.43803 | 8.08722 |
CDS Structure of MLOC_57516
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57516.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g40700.3 |
+2 |
0.0 |
962 |
493/592 (83%) |
13104.m03973 protein steroid nuclear receptor, ligand-binding, putative, expressed |
TAIR PP10 |
AT5G40640.1 |
+2 |
0.0 |
579 |
323/592 (55%) |
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27390.1); Has 104 Blast hits to 102 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:16277345-16280258 FORWARD LENGTH=586 |