MLOC_57516 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.166629.3109410.82428.40696
LEAShoots from the seedlings (10 cm shoot stage)19.969310.51748.3328710.6171
INF1Young developing inflorescences (5mm)14.141513.867413.454110.7951
INF2Developing inflorescences (1-1.5 cm)14.983316.465116.02216.0267
ROORoots from the seedlings (10 cm shoot stage)5.407869.243247.97579.25363
NODDeveloping tillers at six leaf stage, 3rd internode15.406120.728112.65559.3744
CAR5Developing grain, bracts removed (5 DPA)14.624215.884516.22413.9345
CAR15Developing grain, bracts removed (15 DPA)3.740093.856374.438038.08722



CDS Structure of MLOC_57516






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57516.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57516.2CUST_13706_PI427708080AvailableAvailablecontig_41820 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g40700.3 +2 0.0 962 493/592 (83%) 13104.m03973 protein steroid nuclear receptor, ligand-binding, putative, expressed
TAIR PP10 AT5G40640.1 +2 0.0 579 323/592 (55%) unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27390.1); Has 104 Blast hits to 102 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:16277345-16280258 FORWARD LENGTH=586