MLOC_57508 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.695557.536259.702343.7547
LEAShoots from the seedlings (10 cm shoot stage)44.499323.056129.18525.0916
INF1Young developing inflorescences (5mm)42.747941.101835.169927.0715
INF2Developing inflorescences (1-1.5 cm)28.784332.344430.176828.0921
ROORoots from the seedlings (10 cm shoot stage)17.664938.077228.281633.3299
NODDeveloping tillers at six leaf stage, 3rd internode48.462439.325428.6212115.073
CAR5Developing grain, bracts removed (5 DPA)52.586147.623549.26739.5101
CAR15Developing grain, bracts removed (15 DPA)11.409410.905311.418520.2329



CDS Structure of MLOC_57508






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57508.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57508.1CUST_13705_PI427708080AvailableAvailablecontig_41809 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g13470.1 -3 0.0 1084 567/687 (83%) 13104.m01237 protein expressed protein
TAIR PP10 AT4G19490.2 -3 0.0 670 364/704 (52%) | Symbols: ATVPS54, VPS54 | VPS54 | chr4:10616017-10622934 FORWARD LENGTH=1034