- Predicted Gene MLOC_57508
MLOC_57508 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 39.6955 | 57.5362 | 59.7023 | 43.7547 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 44.4993 | 23.0561 | 29.185 | 25.0916 |
| INF1 | Young developing inflorescences (5mm) | 42.7479 | 41.1018 | 35.1699 | 27.0715 |
| INF2 | Developing inflorescences (1-1.5 cm) | 28.7843 | 32.3444 | 30.1768 | 28.0921 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 17.6649 | 38.0772 | 28.2816 | 33.3299 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 48.4624 | 39.3254 | 28.6212 | 115.073 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 52.5861 | 47.6235 | 49.267 | 39.5101 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 11.4094 | 10.9053 | 11.4185 | 20.2329 |
CDS Structure of MLOC_57508
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57508.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g13470.1 |
-3 |
0.0 |
1084 |
567/687 (83%) |
13104.m01237 protein expressed protein |
| TAIR PP10 |
AT4G19490.2 |
-3 |
0.0 |
670 |
364/704 (52%) |
| Symbols: ATVPS54, VPS54 | VPS54 | chr4:10616017-10622934 FORWARD LENGTH=1034 |