MLOC_57507 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.80613.864343.273224.20884
LEAShoots from the seedlings (10 cm shoot stage)16.719318.731127.390318.9112
INF1Young developing inflorescences (5mm)2.197042.341241.473281.8411
INF2Developing inflorescences (1-1.5 cm)1.195321.1971.598211.46563
ROORoots from the seedlings (10 cm shoot stage)0.7719280.3880670.5984440.59916
NODDeveloping tillers at six leaf stage, 3rd internode3.582664.783916.9154617.4837
CAR5Developing grain, bracts removed (5 DPA)4.51494.534723.651284.53561
CAR15Developing grain, bracts removed (15 DPA)0.4495260.2950660.2604380.870873



CDS Structure of MLOC_57507






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57507.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357643NoneNoneNoneNone
MLOC_57507.1CUST_3775_PI427708080AvailableAvailablecontig_41809 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g34950.1 -2 9e-77 236 113/147 (77%) 13107.m03572 protein uncharacterized membrane protein, putative, expressed
TAIR PP10 AT5G52970.1 -2 1e-89 271 133/166 (80%) thylakoid lumen 15.0 kDa protein | chr5:21479620-21481018 FORWARD LENGTH=223