MLOC_57506 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.089225.552423.218519.0393
LEAShoots from the seedlings (10 cm shoot stage)20.377314.697715.24814.0473
INF1Young developing inflorescences (5mm)59.284655.135349.47141.2112
INF2Developing inflorescences (1-1.5 cm)57.671258.06950.418755.2387
ROORoots from the seedlings (10 cm shoot stage)8.5991118.276814.227418.767
NODDeveloping tillers at six leaf stage, 3rd internode12.703615.953114.225352.9754
CAR5Developing grain, bracts removed (5 DPA)35.195732.221438.213630.1189
CAR15Developing grain, bracts removed (15 DPA)12.722811.443510.998223.1782



CDS Structure of MLOC_57506






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57506.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57506.1CUST_13704_PI427708080AvailableAvailablecontig_41808 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g26960.1 -2 0.0 2474 1265/1467 (86%) 13103.m03148 protein intron-binding protein aquarius, putative, expressed
TAIR PP10 AT2G38770.1 -2 0.0 2018 1017/1344 (76%) | Symbols: EMB2765 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16203185-16210253 REVERSE LENGTH=1509