MLOC_57476 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.612564.139293.636113.53764
LEAShoots from the seedlings (10 cm shoot stage)4.340712.718264.143752.95861
INF1Young developing inflorescences (5mm)8.5540210.25759.101287.29375
INF2Developing inflorescences (1-1.5 cm)9.188489.7472610.39019.76078
ROORoots from the seedlings (10 cm shoot stage)4.123444.150594.44464.38226
NODDeveloping tillers at six leaf stage, 3rd internode4.351936.06737.3544719.2275
CAR5Developing grain, bracts removed (5 DPA)7.27466.880087.298016.28328
CAR15Developing grain, bracts removed (15 DPA)0.8056891.017231.08131.99255



CDS Structure of MLOC_57476






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57476.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57476.2CUST_13697_PI427708080AvailableAvailablecontig_41776 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g22450.1 -1 4e-153 453 248/327 (76%) 13103.m02702 protein auxin response factor 75, putative, expressed
TAIR PP10 AT3G05480.3 -1 1e-115 357 214/500 (43%) | Symbols: RAD9 | cell cycle checkpoint control protein family | chr3:1585383-1588238 FORWARD LENGTH=456