MLOC_57475 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1606.671193.661106.391296.23
LEAShoots from the seedlings (10 cm shoot stage)597.736522.362476.568446.773
INF1Young developing inflorescences (5mm)2321.162429.932279.412021.76
INF2Developing inflorescences (1-1.5 cm)1486.391645.511579.971679.06
ROORoots from the seedlings (10 cm shoot stage)1157.31284.491396.31487.58
NODDeveloping tillers at six leaf stage, 3rd internode138.738102.964198.306378.872
CAR5Developing grain, bracts removed (5 DPA)1054.351052.651023.37992.709
CAR15Developing grain, bracts removed (15 DPA)367.369347.438297.479784.345



CDS Structure of MLOC_57475






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57475.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359190NoneNoneNoneNone
MLOC_57475.1CUST_6977_PI427708080AvailableAvailablecontig_41776 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g46490.1 +3 2e-49 158 75/81 (93%) 13103.m05006 protein 40S ribosomal protein S21, putative, expressed
TAIR PP10 AT5G27700.1 +3 2e-42 139 63/81 (78%) Ribosomal protein S21e | chr5:9807541-9808048 REVERSE LENGTH=82